Bayesian networks for Cost, Benefit and Risk Analysis of Agricultural Development Projects

Successful implementation of major projects requires careful management of uncertainty and risk. Yet, uncertainty is rarely effectively calculated when analysing project costs and benefits. In the case of major agricultural and other development projects in Africa this challenge is especially important.

A paper just published* in the journal Experts Systems with Applications presents a Bayesian network (BN) modelling framework to calculate the costs, benefits, and return on investment of a project over a specified time period, allowing for changing circumstances and trade-offs. Marianne Gadeberg and Eike Luedeling have written an overview of the work here.

The framework uses hybrid and dynamic BNs containing both discrete and continuous variables over multiple time stages. The BN framework calculates costs and benefits based on multiple causal factors including the effects of individual risk factors, budget deficits, and time value discounting, taking account of the parameter uncertainty of all continuous variables. The framework can serve as the basis for various project management assessments and is illustrated using a case study of an agricultural development project. The work was a collaboration between the World Agroforestry Centre (ICRAF), Nairobi, Kenya, the Risk Information Management Group at Queen Mary (as part of the BAYES-KNOWLEDGE project) and Agena Ltd.

*The full reference is:

Yet, B., Constantinou, A., Fenton, N., Neil, M., Luedeling, E., & Shepherd, K. (2016). "A Bayesian Network Framework for Project Cost, Benefit and Risk Analysis with an Agricultural Development Case Study" . Expert Systems with Applications, Volume 60, 30 October 2016, Pages 141–155. DOI: 10.1016/j.eswa.2016.05.005. 

Until July 2016 the full published pdf is available for free.  A permanent pre-publication pdf is available here.

See also: Can we build a better project: assessing complexities in development projects

Acknowledgements: Part of this work was performed under the auspices of EU project ERC-2013-AdG339182-BAYES_KNOWLEDGE and part under ICRAF Contract No SD4/2012/214 issued to Agena. We acknowledge support from the Water, Land and Ecosystems (WLE) program of the Consultative Group on International Agricultural Research (CGIAR).

Using Bayesian networks to assess new forensic evidence in an appeal case

If new forensic evidence becomes available after a conviction how do lawyers determine whether it raises sufficient questions about the verdict in order to launch an appeal? It turns out that there is no systematic framework to help lawyers do this. But a paper published today by Nadine Smit and colleagues in Crime Science presents such a framework driven by a recent case, in which a defendant was convicted primarily on the basis of sound evidence, but where subsequent analysis of the evidence revealed additional sounds that were not considered during the trial.

From the case documentation, we know the following:

• A baby was injured during an incident on the top floor of a house
• Blood from the baby was found on the wall in one of the rooms upstairs
• On an audio recording of the emergency telephone call made by the suspect, a scraping sound (allegedly indicating scraping blood off a wall) can be heard
• The suspect was charged with attempted murder 

The audio evidence played a significant role in the trial. But, during the appeal preparation process, the call was re-analysed by an audio expert on behalf of the defence, and four other sounds were identified on the same recording that, according to the expert, showed similarities to the original sound. In particular, one of these sounds was of interest because of background noise that could be heard simultaneously. The background noise was presumed to be the television, which was located in a different room to where the prosecution argued the scraping of the blood took place.  During this second sound, the TV (located downstairs) could be heard simultaneously on the emergency recording. A statement by the police reads that the suspect was frequently rubbing his face in their presence. The defence proposed that the incriminating sound in the recording was not blood scraping after all, but simply the defendant rubbing his face.

The framework described in Smit's paper is intended to overcome the gap between what is generally known from scientific analyses and what is hypothesized in a legal setting. It is based on Bayesian networks (BNs) which are a structured and understandable way to evaluate the evidence in the specific case context and present it in a clear manner in court. However, BN methods are often criticised for not being sufficiently transparent for legal professionals. To address this concern the paper shows the extent to which the reasoning and decisions of the particular case can be made explicit and transparent. The BN approach enables us to clearly define the relevant propositions and evidence, and uses sensitivity analysis to assess the impact of the evidence under different prior assumptions. The results show that such a framework is suitable to identify information that is currently missing, and clearly crucial for a valid and complete reasoning process. Furthermore, a method is provided whereby BNs can serve as a guide to not only reason with incomplete evidence in forensic cases, but also identify very specific research questions that should be addressed to extend the evidence base to solve similar issues in the future.

Full citation:

Smit, N. M., Lagnado, D. A., Morgan, R. M., & Fenton, N. E. (2016). "An investigation of the application of Bayesian networks to case assessment in an appeal case". Crime Science, 2016, 5: 9, DOI 10.1186/s40163-016-0057-6 (open source). Published version pdf.

The research was funded by the Engineering and Physical Sciences Research Council of the UK through the Security Science Doctoral Research Training Centre (UCL SECReT) based at University College London (EP/G037264/1), and the European Research Council (ERC-2013-AdG339182-BAYES_KNOWLEDGE). 

The BN model (which is fully spceified in the paper) was built and run using the free version of AgenaRisk.

Turning poorly structured data into intelligent Bayesian Network models for medical decision support

Medical data is very often badly structured, incomplete and inconsistent. This limits our ability to  generate useful models for prediction and decision support if we rely purely on machine learning techniques. That means we need to exploit expert knowledge at various model development stages. This problem - which is common in many application domains - is tackled in a paper** published in the latest issue of Artificial Intelligence in Medicine.

The paper describes a rigorous and repeatable method for building effective Bayesian Network (BN) models from complex data - much of which comes in unstructured and incomplete responses by patients from questionnaires and interviews. Such data inevitably contains repetitive, redundant and contradictory responses; without expert knowledge learning a BN model from the data alone is especially problematic where we are interested in simulating causal interventions for risk management. The novelty of this work is that it provides a rigorous consolidated and generalised framework that addresses the whole life-cycle of BN model development. The method is validated using data from forensic psychiatry. The resulting BN models demonstrate competitive to superior predictive performance against the data-driven state-of-the-art models. More importantly, the resulting BN models go beyond improving predictive accuracy and into usefulness for risk management through intervention, and enhanced decision support in terms of answering complex clinical questions that are based on unobserved evidence.

The method is applicable to any application domain involving large-scale decision analysis based on such complex and unstructured information. It challenges decision scientists to reason about building models based on what information is really required for inference, rather than based on what data is available. Hence, it forces decision scientists to use available data in a much smarter way.

**The full reference for the paper is:

Constantinou, A. C., Fenton, N., Marsh, W., & Radlinski, L. (2016). "From complex questionnaire and interviewing data to intelligent Bayesian Network models for medical decision support".Artificial Intelligence in Medicine, Vol 67 pages 75-93. DOI http://dx.doi.org/10.1016/j.artmed.2016.01.002

For those who do not have access to the journal a pre-publication draft can be downloaded: http://constantinou.info/downloads/papers/complexBN.pdf 

Cyber security risk of nuclear facilities using Bayesian networks

Scientists from Korea (Jinsoo Shin, Hanseong Son, Rahman Khalilur, and Gyunyoung Heo) have published an article describing their Bayesian network model for assessing cyber security risk of nuclear facilities (using the AgenaRisk tool). It is based on combining two models - one which is process based (considers how well security procedures were followed) and the other which is considers the system architecture (considering vulnerabilities and controls). The full paper is here:

Shin, J., Son, H., Khalil ur, R., & Heo, G. (2015). Development of a cyber security risk model using Bayesian networks. Reliability Engineering & System Safety, 134, 208–217. doi:10.1016/j.ress.2014.10.006

Bayesian Networks for Risk Assessment of Public Safety and Security Mobile Service

A new paper by Matti Peltola and Pekka Kekolahti of the Aalto University (School of Electrical Engineering) in Finland uses Bayesian Networks and the AgenaRisk tool to gain a deeper understanding of the availability of Public Safety and Security (PSS) mobile networks and their service under different conditions. The paper abstract states:

A deeper understanding of the availability of Public Safety and Security (PSS) mobile networks and their service under different conditions offers decision makers guidelines on the level of investments required and the directions to take in order to decrease the risks identified. In the study, a risk assessment model for the existing PSS mobile service is implemented for both a dedicated TETRA PSS mobile network as well as for a commercial 2G/3G mobile network operating under the current risk conditions. The probabilistic risk assessment is carried out by constructing a Bayesian Network. According to the analysis, the availability of the dedicated Finnish PSS mobile service is 99.1%. Based on the risk assessment and sensitivity analysis conducted, the most effective elements for decreasing availability risks would be duplication of the transmission links, backup of the power supply and real-time mobile traffic monitoring. With the adjustment of these key control variables, the service availability can be improved up to the level of 99.9%. The investments needed to improve the availability of the PSS mobile service from 99.1 % to 99.9% are profitable only in highly populated areas. The calculated availability of the PSS mobile service based on a purely commercial network is 98.8%. The adoption of a Bayesian Network as a risk assessment method is demonstrated to be a useful way of documenting different expert knowledge as a common belief about the risks, their magnitudes and their effects upon a Finnish PSS mobile service.

Full reference details:

Peltola, M. J., & Kekolahti, P. (2015). Risk Assessment of Public Safety and Security Mobile Service. In 2015 10th International Conference on Availability, Reliability and Security (pp. 351–359). IEEE. doi:10.1109/ARES.2015.65

Using Bayesian networks to assess and manage risk of violent reoffending among prisoners

Fragment of BN model

Probation officers, clinicians, and forensic medical practitioners have for several years sought improved decision support for determining whether and when to release prisoners with mental health problems and a history of violence.  It is critical that the risk of violent re-offending is accurately measured and, more importantly, well managed with causal interventions to reduce this risk after release. The well-established 'risk predictors' in this area of research are typically based on statistical regression models and their results are less than convincing. But recent work undertaken at Queen Mary University of London has resulted in Bayesian network (BN) models that not only have much greater accuracy, but which are also much more useful for decision support. The work has been developed as part of a collaboration between the Risk and Information Management group and the medical practitioners of the Violence Prevention Research Unit (VPRU) of the Wolfson Institute of Preventative Medicine.

The (BN) model, called DSVM-P (Decision Support for Violence Management – Prisoners) captures the causal relationships between risk factors, interventions and violence.  It also allows for specific risk factors to be targeted for causal intervention for risk management of future re-offending. These decision support features are not available in the previous generation of models used by practitioners and forensic psychiatrists.

Full reference:
Constantinou, A., Freestone M., Marsh, W., Fenton, N. E. , Coid, J. (2015) "Risk assessment and risk management of violent reoffending among prisoners", Expert Systems With Applications 42 (21), 7511-7529.  Published version: http://dx.doi.org/10.1016/j.eswa.2015.05.025.
Download Pre-publication draft.